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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65689238_65690577_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
65689238 - 65690577
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ACAAATGTGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGCTCTTTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
52.9
0.07
1.2
45.8
44.8
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
67.7
0.54
1.2
69.75
36.4

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027759
65659083 - 65690627
31545