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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65725181_65727934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65725181 - 65727934
Intron Length:
2754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTGAAAT
Flanking Amino Acid:
ITAYFRITRKAFVNPEDTAS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.7
0.35
1.1
63.2
42
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
59
0.36
1.5
78.6
37.2

Associated Gene:

Gene:
MGST1
Ensembl Gene ID:
ENSAPLG00000010726
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041046
65722346 - 65775703
53358
ENSAPLT00000047817
65723498 - 65731232
7735
ENSAPLT00000011170
65722843 - 65731591
8749
ENSAPLT00000047444
65723995 - 65731232
7238
ENSAPLT00000045749
65722346 - 65731591
9246