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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65728030_65730985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65728030 - 65730985
Intron Length:
2956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
AACACTATAAAA
Flanking Amino Acid:
RTDADVERVRRGHLNDLENI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
47
-0.2
1.7
54.19
37.6

Associated Gene:

Gene:
MGST1
Ensembl Gene ID:
ENSAPLG00000010726
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045749
65722346 - 65731591
9246
ENSAPLT00000041046
65722346 - 65775703
53358
ENSAPLT00000011170
65722843 - 65731591
8749
ENSAPLT00000047817
65723498 - 65731232
7735
ENSAPLT00000047444
65723995 - 65731232
7238