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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65731156_65775629_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65731156 - 65775629
Intron Length:
44474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
CCTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
GCCATTTTACCT
Flanking Amino Acid:
YLIPLPQPARGCSAAHGLNF
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81.7
0.71
0.7
73
31.9
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
48.5
-0
1.6
60.02
44

Associated Gene:

Gene:
MGST1
Ensembl Gene ID:
ENSAPLG00000010726
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041046
65722346 - 65775703
53358