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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65794093_65797758_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65794093 - 65797758
Intron Length:
3666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTCCATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CAGACCTTGATT
Flanking Amino Acid:
GLMKEGYAPQKALPTTACCV
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
58.2
43.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
83.2
0.75
0.7
78.7
28.4
Minor 5ss
38.5
-1.3
3
48.5
47.1
Minor BPS
61.5
0.44
1.4
68.33
43

Associated Gene:

Gene:
LMO3
Ensembl Gene ID:
ENSAPLG00000010662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011097
65793988 - 65858906
64919