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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65850881_65850969_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65850881 - 65850969
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
GTATCTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
TATCTTCTAAAG
Flanking Amino Acid:
SLFIALAVFQALDKYWHEDC
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
67.8
0.4
1.1
67.6
38
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
47.6
-0.3
1.8
55.84
39

Associated Gene:

Gene:
LMO3
Ensembl Gene ID:
ENSAPLG00000010662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024050
65797750 - 65851104
53355