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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65850970_65858414_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65850970 - 65858414
Intron Length:
7445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTATTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
1
72.5
42.4
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
57.1
0.3
1.8
75.45
41.9

Associated Gene:

Gene:
LMO3
Ensembl Gene ID:
ENSAPLG00000010662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011097
65793988 - 65858906
64919