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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65858481_65858699_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
65858481 - 65858699
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GACCTTTCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTTTTTGACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
58.7
0.2
1.1
56
38.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
72
0.67
1.1
76.55
34.1

Associated Gene:

Gene:
LMO3
Ensembl Gene ID:
ENSAPLG00000010662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011097
65793988 - 65858906
64919