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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6606102_6606965_R

Intron Information:

Intron Rank:
137526
Intron Class:
major
Intron Phase:
Intron Coordinates:
6606102 - 6606965
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
CCCTCTTCGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAA
U12 Branch Point Sequence:
GTTGGTTGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
54.3
0.11
1.3
49.1
46.3
Major PPT
67.3
0.39
0.9
64.8
30.8
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
47.4
-0.3
2
56.55
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026052
6605058 - 6607647
2590