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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66079264_66085311_F

Intron Information:

Intron Rank:
140382
Intron Class:
major
Intron Phase:
Intron Coordinates:
66079264 - 66085311
Intron Length:
6048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACATCCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.2
0.63
0.8
72.3
32.5
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
66.8
0.51
1.5
70.29
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025528
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043419
66078636 - 66090200
11565