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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66110453_66115018_F

Intron Information:

Intron Rank:
134255
Intron Class:
major
Intron Phase:
Intron Coordinates:
66110453 - 66115018
Intron Length:
4566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGG
5'SS Class:
major
3'SS Sequence:
CTATGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTAGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.4
0.62
0.9
73.9
40.2
Minor 5ss
38.1
-1.3
2.9
48.8
47
Minor BPS
54.2
0.21
2
82.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022148
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028478
66110413 - 66136910
26498