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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66115110_66135105_F

Intron Information:

Intron Rank:
134256
Intron Class:
major
Intron Phase:
Intron Coordinates:
66115110 - 66135105
Intron Length:
19996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCCATTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78
0.63
0.9
72.5
37.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
49.8
0.06
1.5
63.61
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022148
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028478
66110413 - 66136910
26498