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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66138219_66144764_F

Intron Information:

Intron Rank:
133824
Intron Class:
major
Intron Phase:
Intron Coordinates:
66138219 - 66144764
Intron Length:
6546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CTTTATTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
76.6
0.6
1
69.9
40.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
56.5
0.2
2
71.69
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018765
66138125 - 66153687
15563