Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66138219_66147094_F

Intron Information:

Intron Rank:

133830

Intron Class:

major

Intron Phase:

Intron Coordinates:

66138219 - 66147094

Intron Length:

8876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTAATGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTATATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.6

33.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

74.2

0.54

65.9

44.2

Minor 5ss

35.2

-1.7

49.5

46.3

Minor BPS

52.6

0.06

1.8

70.26

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040317

66138125 - 66153687

15563