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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66147142_66148436_F

Intron Information:

Intron Rank:
133826
Intron Class:
major
Intron Phase:
Intron Coordinates:
66147142 - 66148436
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
84.6
0.86
1
74
41.2
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040317
66138125 - 66153687
15563
ENSAPLT00000029002
66147009 - 66153687
6679
ENSAPLT00000018765
66138125 - 66153687
15563