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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66148493_66152534_F

Intron Information:

Intron Rank:
133827
Intron Class:
major
Intron Phase:
Intron Coordinates:
66148493 - 66152534
Intron Length:
4042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
87.2
0.84
0.7
81.7
29
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018765
66138125 - 66153687
15563
ENSAPLT00000040317
66138125 - 66153687
15563
ENSAPLT00000029002
66147009 - 66153687
6679