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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66499832_66502871_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
66499832 - 66502871
Intron Length:
3040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTTGTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
73
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661