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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66503619_66509779_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66503619 - 66509779
Intron Length:
6161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTTTTGGTATTT
Flanking Amino Acid:
WPSSSGHDREVTGWSIQLVE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.6
0.6
0.9
74.4
40.4
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
41.6
-0.5
2.6
66.23
45.5

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661