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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66509863_66513499_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66509863 - 66513499
Intron Length:
3637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CGTGCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTAGGCATAATT
Flanking Amino Acid:
NTVAFCNAVEEIRNAYPAYD
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.3
0.61
0.9
73.1
37.3
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
49.5
0.05
2.1
73.52
43.5

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661