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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66513658_66516879_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66513658 - 66516879
Intron Length:
3222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTATCTTTATTT
Flanking Amino Acid:
SPYPLLLTKHAGCITHNLIA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.4
0.89
0.7
84.1
29.7
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
63.5
0.5
1.6
76.15
41.3

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661