About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66516992_66526124_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66516992 - 66526124
Intron Length:
9133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCCCAAATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
TTCTCCCCAAAT
Flanking Amino Acid:
SVCGSDEFLQNNCTLGSHES
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
62.2
0.28
0.9
54.7
33.6
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
54.6
0.22
2
78.67
43

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661