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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66526228_66532652_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66526228 - 66532652
Intron Length:
6425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTCTCTTCTACA
Flanking Amino Acid:
TNLKQSLARTYEDDQRQFSV
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.8
41.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
88.6
0.87
0.6
83.7
24.6
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
56.6
0.2
1.9
71.34
40.8

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661