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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66532724_66538139_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66532724 - 66538139
Intron Length:
5416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCAATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTCCAATT
Flanking Amino Acid:
LEYTCAWRLTRLNLVSVIMK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.7
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.1
0.56
0.9
65.2
39.9
Minor 5ss
34.2
-1.8
2.9
42.9
43.6
Minor BPS
61.5
0.44
1.9
84.92
35.7

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661