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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66548579_66556582_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66548579 - 66556582
Intron Length:
8004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
TLQCVETPDKALMEAAVTEL
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
0.7
77.2
24.7
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661