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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66556779_66561084_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66556779 - 66561084
Intron Length:
4306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTGCAGTTAATC
Flanking Amino Acid:
AHNIPEVWVNSYKVFSFSCS
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
48.9
-0.1
2.2
64.65
41.1

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661