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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66583707_66596078_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66583707 - 66596078
Intron Length:
12372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TACCTCTTAATG
Flanking Amino Acid:
PLEAFGLLTFSFPDKDIRRT
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.4
0.66
0.9
77.9
36.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
63.8
0.29
1.4
61.43
40.8

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661