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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66633408_66636113_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66633408 - 66636113
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTTTCTTAATT
Flanking Amino Acid:
HHQLESSYQEAIRNFFYSCA
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.3
0.61
0.9
79.3
33
Minor 5ss
43.8
-0.7
2.9
57.4
46.8
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661