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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66656763_66664167_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66656763 - 66664167
Intron Length:
7405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAA
U12 Branch Point Sequence:
GATACATCAATA
Flanking Amino Acid:
SDLQATSYFTRKIKESLECF
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
57.7
0.19
1.1
60
36
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
48.7
-0.1
1.8
60.34
38.9

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661