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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66702400_66707919_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66702400 - 66707919
Intron Length:
5520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TATATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCTGTTAACC
Flanking Amino Acid:
KSTDPTYNEIVVYNKVMELK
Intron Amino Acid Position:
1427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
75.3
33.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.4
0.71
0.9
78.4
39.4
Minor 5ss
35.5
-1.6
2.9
49.8
40.3
Minor BPS
64.3
0.43
2
79.35
35.8

Associated Gene:

Gene:
PIK3C2G
Ensembl Gene ID:
ENSAPLG00000009943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010372
66499412 - 66708072
208661