About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66711102_66713866_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66711102 - 66713866
Intron Length:
2765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGGTTAATA
Flanking Amino Acid:
YTLPLLSLSKGYRNVPLFSK
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.9
73.6
40.2
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
52.5
0.07
2.4
71.78
40.8

Associated Gene:

Gene:
PLCZ1
Ensembl Gene ID:
ENSAPLG00000009837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035623
66710948 - 66758473
47526
ENSAPLT00000010287
66710948 - 66758940
47993