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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66731218_66732846_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66731218 - 66732846
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTGCCTTACCA
Flanking Amino Acid:
VKARKFVKHSGNEFVSHTSR
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
72
0.69
1.7
83.03
38.2

Associated Gene:

Gene:
PLCZ1
Ensembl Gene ID:
ENSAPLG00000009837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035623
66710948 - 66758473
47526
ENSAPLT00000010287
66710948 - 66758940
47993