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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66733004_66735327_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66733004 - 66735327
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATGATTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGTTCTTACAT
Flanking Amino Acid:
PSSTPRKKAKIKKIKIAIEL
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.9
0.42
1
68
42.3
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
56.3
0.28
1.8
72.17
44.9

Associated Gene:

Gene:
PLCZ1
Ensembl Gene ID:
ENSAPLG00000009837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010287
66710948 - 66758940
47993
ENSAPLT00000035623
66710948 - 66758473
47526