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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66757777_66759306_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
66757777 - 66759306
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
GAGCGTGAAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGGCCAGGACC
Flanking Amino Acid:
GTPLTDFTRESEPEKVSLIC
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
48.9
-0
1.1
40.2
42.7
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
48.1
-0.1
1.9
63.5
42.2

Associated Gene:

Gene:
CAPZA3
Ensembl Gene ID:
ENSAPLG00000009710
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010104
66757735 - 66760615
2881