About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6684279_6688242_R

Intron Information:

Intron Rank:
149489
Intron Class:
major
Intron Phase:
Intron Coordinates:
6684279 - 6688242
Intron Length:
3964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
AACCTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTCCTCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
62
0.3
1
62.3
30.4
Major PPT
61.7
0.26
0.9
54.3
34.6
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
53.8
0.1
1.7
65.16
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047414
6683437 - 6688918
5482