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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66930728_66931424_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
66930728 - 66931424
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAAATAC
5'SS Class:
major
3'SS Sequence:
AAGTCTTCACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGTTTTTTACGT
Flanking Amino Acid:
KEHQAKLLIYIPQKCIARVH
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
67.5
32
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
52.9
0.07
1.1
51
42.2
Minor 5ss
40
-1.1
3.2
54.7
43.1
Minor BPS
50.5
0.09
1.9
69.96
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020756
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037957
66930367 - 66931528
1162