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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_66994917_67002279_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66994917 - 67002279
Intron Length:
7363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
GATATTATAACA
Flanking Amino Acid:
AALVQTEPVKRVEKLTTENT
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.8
0.78
0.7
80.9
24.3
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
51.9
0.05
1.6
62.85
36.7

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018561
66878785 - 67041960
163176
ENSAPLT00000036611
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176
ENSAPLT00000031479
66878785 - 67041960
163176
ENSAPLT00000030084
66878785 - 67041960
163176
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000039515
66878785 - 67041960
163176