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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6700161_6704932_F

Intron Information:

Intron Rank:
135648
Intron Class:
major
Intron Phase:
Intron Coordinates:
6700161 - 6704932
Intron Length:
4772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATGCTATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.5
0.73
0.9
76.3
37.8
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
56.6
0.19
1.7
66.9
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040641
6699598 - 6705577
5980