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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67002748_67006814_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67002748 - 67006814
Intron Length:
4067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTCCACTAATA
Flanking Amino Acid:
RGKGQEEEARGIISYQTLPR
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
50.9
0.03
1.9
68.19
37.5

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000039515
66878785 - 67041960
163176
ENSAPLT00000018561
66878785 - 67041960
163176
ENSAPLT00000036611
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176
ENSAPLT00000031479
66878785 - 67041960
163176
ENSAPLT00000030084
66878785 - 67041960
163176