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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67008986_67012446_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67008986 - 67012446
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
TGCTGCCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCCCTCTGACT
Flanking Amino Acid:
VTPQSLQGKTSEILSHHLQR
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.9
38.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
61.8
0.27
1
54.6
41.4
Minor 5ss
38.7
-1.3
3
54.8
43.5
Minor BPS
58.1
0.33
1.7
77.43
39.1

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009394
66878785 - 67041960
163176