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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67008986_67023841_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67008986 - 67023841
Intron Length:
14856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTCCTTATAG
Flanking Amino Acid:
VTPQSLQGKTLTQEECRGAL
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.9
38.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.2
0.79
0.6
80.6
24.8
Minor 5ss
38.7
-1.3
3
54.8
43.5
Minor BPS
63
0.27
1.8
68.56
44.7

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036611
66878785 - 67041960
163176