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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67012501_67018118_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67012501 - 67018118
Intron Length:
5618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTGAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCCTCCTGATTT
Flanking Amino Acid:
QRNAIYLDHQMKENEPLITM
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
59.1
0.21
1.1
55.5
43.7
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
56.6
0.29
1.8
72.32
45

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031479
66878785 - 67041960
163176
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176