About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67012501_67023841_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67012501 - 67023841
Intron Length:
11341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTCCTTATAG
Flanking Amino Acid:
QRNAIYLDHQLTQEECRGAL
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.2
0.79
0.6
80.6
24.8
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
63
0.27
1.8
68.56
44.7

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039515
66878785 - 67041960
163176