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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67026853_67027939_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67026853 - 67027939
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGCAT
5'SS Class:
major
3'SS Sequence:
TCTTTACTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TCTTTCTTTACT
Flanking Amino Acid:
EQLDRLGEIQTESAGIQRAQ
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
67.4
39.3
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
77.1
0.61
1
73.8
35.8
Minor 5ss
33.1
-1.9
3.3
46.2
49.1
Minor BPS
73.8
0.83
1.6
87.49
38.1

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030084
66878785 - 67041960
163176
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000039515
66878785 - 67041960
163176
ENSAPLT00000018561
66878785 - 67041960
163176
ENSAPLT00000036611
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176
ENSAPLT00000031479
66878785 - 67041960
163176