About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67028052_67028299_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
67028052 - 67028299
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCTCAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
TGCCCCTCAAAC
Flanking Amino Acid:
HKQQRSSSDGGIMGSRTFSA
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
59.8
0.22
1
54.2
34.3
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
53.7
0.09
1.7
62.74
41.9

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009394
66878785 - 67041960
163176
ENSAPLT00000031479
66878785 - 67041960
163176
ENSAPLT00000030084
66878785 - 67041960
163176
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000039515
66878785 - 67041960
163176
ENSAPLT00000018561
66878785 - 67041960
163176
ENSAPLT00000036611
66878785 - 67041960
163176