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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67028347_67029977_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67028347 - 67029977
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTTTATTTACCT
Flanking Amino Acid:
TFSAIKYKNEGPDYRLYKSE
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.7
0.69
0.9
77.5
36.5
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
62.2
0.46
1.8
81.57
39.9

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030084
66878785 - 67041960
163176
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176