Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67030096_67033947_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

67030096 - 67033947

Intron Length:

3852

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTCCC

5'SS Class:

major

3'SS Sequence:

TACTATTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGCAT

U12 Branch Point Sequence:

TATTGCTTTACT

Flanking Amino Acid:

QMSESESTAKGSHFPVGVVP

Intron Amino Acid Position:

888

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

63.6

40.8

Major BPS

63.3

0.33

1.5

41.2

Major PPT

77.8

0.63

0.9

71.9

37.4

Minor 5ss

37.9

-1.4

2.6

46.2

41.9

Minor BPS

64.5

0.54

2.1

85.25

40.9

Associated Gene:

Gene:

PLEKHA5

Ensembl Gene ID:

ENSAPLG00000008987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019950

66878785 - 67041960

163176

ENSAPLT00000039515

66878785 - 67041960

163176

ENSAPLT00000018561

66878785 - 67041960

163176

ENSAPLT00000036611

66878785 - 67041960

163176

ENSAPLT00000009394

66878785 - 67041960

163176

ENSAPLT00000031479

66878785 - 67041960

163176

ENSAPLT00000030084

66878785 - 67041960

163176