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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67034064_67035280_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67034064 - 67035280
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TCTTCCATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCTCTTAAAA
Flanking Amino Acid:
RKNKKIDLRTERPRSAVEQL
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
64.5
37.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
73
0.52
1
76.4
31
Minor 5ss
39
-1.2
3
49.2
47
Minor BPS
74.6
0.77
1.3
82.08
32

Associated Gene:

Gene:
PLEKHA5
Ensembl Gene ID:
ENSAPLG00000008987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019950
66878785 - 67041960
163176
ENSAPLT00000039515
66878785 - 67041960
163176
ENSAPLT00000018561
66878785 - 67041960
163176
ENSAPLT00000036611
66878785 - 67041960
163176
ENSAPLT00000009394
66878785 - 67041960
163176
ENSAPLT00000031479
66878785 - 67041960
163176
ENSAPLT00000030084
66878785 - 67041960
163176