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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67085919_67094002_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67085919 - 67094002
Intron Length:
8084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCATCA
Flanking Amino Acid:
LTHSGDKPFKCVVGGCNASF
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.8
82.8
27.4
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
69.5
0.61
1.8
83.94
36.4

Associated Gene:

Gene:
AEBP2
Ensembl Gene ID:
ENSAPLG00000008722
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009093
67063601 - 67116740
53140
ENSAPLT00000023451
67063601 - 67116736
53136