About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67115426_67116709_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
3UTR

Intron Coordinates:
67115426 - 67116709

Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTTTGTATA

5'SS Class:
major

3'SS Sequence:
TCTTCTTTTCCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTGTGAA

U12 Branch Point Sequence:
TTTTTGTGAAAG

Flanking Amino Acid:
3UTR

Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.7
0.49
1.2
73.6
36.5

Major BPS
72.1
0.55
1.2
63.4
44.3

Major PPT
91.2
0.93
0.6
84.1
30.8

Minor 5ss
41.9
-0.9
2.5
49.3
41.1

Minor BPS
48.7
-0.2
2.3
65.14
42.5

Associated Gene:

Gene:
AEBP2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

67063601 - 67116736
53136