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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_67228364_67239669_F

Intron Information:

Intron Rank:
144655
Intron Class:
major
Intron Phase:
Intron Coordinates:
67228364 - 67239669
Intron Length:
11306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACATGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTACTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.1
0.57
1
65.6
44.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
73
0.72
1.2
75.57
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044473
67228174 - 67239756
11583